In situations where documents are reorganized, you may need to re-arrange your folders. It can be done following these simple steps:
In your Documents App, click on Toolbox
Click on Manage Folder
Choose the folder you need to reorganize and click on [View Sub folders]. In my example I need to view Sub-Folders under Accounting.
Click on the sub-folder. In my example it is called Account Payable and click on [move]
Choose "top level folder" and click on the Move button
Moving a sub-folder into a new folder, means that the security settings for the sub-folder will now be the ones of the new folder it resides in. However, moving a sub-folder as a folder, will not change the security settings for that folder. In my example, Account Payable will keep the security settings it had when it was a sub-folder for the Accounting folder.